PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G176200.1
Common NamePHAVU_001G176200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 500aa    MW: 54374.9 Da    PI: 9.5959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G176200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056587123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Phvul.001G176200.1 65 FICEICNKGFQRDQNLQLHRRGH 87
                        89*******************88 PP

2zf-C2H213.90.00016141163123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Phvul.001G176200.1 141 WKCEKCSKKYAVQSDWKAHTKTC 163
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-66487No hitNo description
Gene3DG3DSA:3.30.160.601.3E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0226587IPR015880Zinc finger, C2H2-like
PfamPF121716.0E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355140106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.62E-6136161No hitNo description
SMARTSM00355130141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MQMIPSDPFS LSTTLPGLPN EQNTNPNPNP PPPLTKKKRN LPGTPDPDAE VIALSPKTLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE VRKKVYICPE KTCVHHHAAR  120
ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALVEESSRLS SVSTSSLNFK SEDATVMNTQ AGLSSHGLIT GQGMQSVPHF  240
GPHGFRLMGM GADQQRPNLS LWLNQGNHHI NNPLDVASSS SSGLPEVVQI AQANNALIGS  300
SSIFSNFGMP ASNSKGEGGA SDLASIYSES QNKNSISASP MSATALLQKA AQMGSTRSTN  360
PSIFRGSFGV MSSSSAQSTS LNSNANQSCD QLNQAFQNFN QHENFNGSSS SATMLGSSTD  420
FSSLTHSSNG FDQFLMQNNV EPTQLKLHPV SNTVEHNLTR DFLGMSRNGG GHPFLPQELV  480
KFASLGSSMG LNQFTAAHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103KLRQRSNKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162739.10.0hypothetical protein PHAVU_001G176200g
SwissprotQ700D21e-136IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLV7CZC30.0V7CZC3_PHAVU; Uncharacterized protein
STRINGGLYMA03G33700.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-105C2H2-like zinc finger protein